Just found this and it's a timesaver!!
version 0.7.6
ALL CREDIT FOR THIS SOFTWARE GOES TO PANPIOTR FROM XDA
ORIGINAL THREAD FOUND HERE: http://forum.xda-developers.com/showthread.php?t=622873
If you like his work follow his TWITTER 
OFFICIAL WEBSITE
Hi Guys!
Android Commander is windows application to keep control on your android apps and files from PC. This is a small, very very fast and intuitive app. I made this app for myself. If someone want to try it, go a head, but remember it's very experimental 
I need your feedback to make it better!
Functions:
Explore files:
- copy multiple files/dirs between Phone and PC
- copy multiple files/dirs between Phone folders
- delete multiple files/dirs from Phone
- new dir and rename options
- drag&drop multiple files/dirs in to progrm window to push them to Phone
- drag&drop multiple files/dirs between Phone/PC folders inside program to copy
- bookmarks
Manage apps:
- associate apk files
- backup multiple apps to any dir on Phone/PC
- batch apps install
- install as private
- reinstall
- batch uinstall apps
- uninstall with option to keep data or not
Console:
- type any shell command
- run sh script from pc
and more...
Requirements:
- rooted android phone with busybox (should work for most)
- installed newest Android SDK on PC (with sdk\tools in "Path") *
- USB cable and some luck 
* Download the Android SDK: http://developer.android.com/sdk/index.html
* Installing the Android SDK: http://developer.android.com/sdk/installing.html
Tested on:
- G1 + CyanogenMod 4.2.14.1 and older
- G1 + xROM Eclair 1.0
- G1 + Dwang 1.17.1
- G1 + SuperD 1.7/1.8/1.9.2
- Magic 32B + CyanogenMod 4.2.14.1
- Hero + Modaco 3.0/3.1
- Hero + Hik@Ri_2.1.0_93o_n.s
- Hero + CKDroid 1.5
- Nexus One + Enomther add-on
- Nexus One + Cyanogen add-on
- anyway it should work with almost any phone/rom
(everything depends on installed BusyBox)
Screens:




Download:
* at first run program will copy some files and close, second run in normal 
Android Commander 0.7.6:
http://www.mediafire.com/?auyg0ynymom
mirror: http://www.megaupload.com/?d=UYNVTM70
[CODE]
- from now program should work for all roms with **** in adb results
- fixed bug on program start when daemon is not active
- quick search in computer and phone files
- soting options in computer and phone files
- dirs bar for quicker going back
- manual address entering
- hidden directories in phone files
- automatic giving names for backuping apps (name + version) *
- from now program will ask before actualization even one app **
- more changes and fixes
* if program can not read app neme, will use "package name"
if program can not read app version, will use actual date
** sometimes this one app is a game with 10mb size,
then it is freezing program for too long
Android Commander 0.7.5.1:
http://www.mediafire.com/?nhxgzgzkjxt
mirror: http://www.megaupload.com/?d=CG3M99AV
Code:
- fixed auto checking applications list for missed info (now it works :)) *
- fixed checking busybox type
* program always on applications list loading checking for missed info
if find one app, will just update it, without asking
if find 2 or more apps, will ask first
Android Commander 0.7.5:
http://www.mediafire.com/?xmjnjymzzmu
mirror: http://www.megaupload.com/?d=XE9Y4LTE
Code:
Changes:
- applications names in applications manager list
- quick search works for apps names now
- sorting by apps names (old renamed to file name)
- auto checking for apps without info on list loading
- option to reload info only apps without info
- bigger icons in applications manager and installer
- better resizing algorithm for icons
- option to set auto close log window on operation finish
- quick search and sorting options in applications installer
- option to run custom command on program start
- changed default apk icon ;)
- fixed bug with sorting by size on some roms
- lots more small fixes and changes
Android Commander 0.7.4.1:
http://www.mediafire.com/?dglj1iy0yzq
mirror: http://www.megaupload.com/?d=4T5JJ82X
Code:
Changes:
- new applications installer window for easer batch apps installing
- associating program with apk files will also add in folder context menu new option: "Show Android Applications"
- context menu for address bars: copy, add to bookmarks, remove from bookmarks
- removed add bookmark button (now is useless)
- program remember lists positions when you going back
- fixed dirs problem when copy files
- some changes in log window
- lots of bug fixes, and some more changes ;)
Android Commander 0.7.3:
http://www.mediafire.com/?y2mldvdmynl
mirror: http://www.megaupload.com/?d=6Y27VBLI
Code:
Changes:
- changed positions of Application Manager and Computer Files (now is more natural ;))
- bookmarks :)
- you can open any file in Computer Files
- icons for music/video/image formats readable for phone (and zips)
- window "About" with changelog
- button New Dir in Computer Files
- reading info and icons from apps works better now
- if your phone is not connected and you will open apk file info, you will se info "no device"
- hidden and system windows files are hidden in Computer Files
- log window disabling main window during progress
- more small fixes/changes
Android Commander 0.7.2.01:
http://www.mediafire.com/?dmu2c4zizmh
mirror: http://www.megaupload.com/?d=NJKJI587
Code:
Changes:
- fixed bug with refresh buttons
Android Commander 0.7.2: http://www.mediafire.com/?zcjqyid4zzz
Code:
Changes:
- sorting works for all now
- new options in context menu:
--- application manager: backup
--- phone files: pull, rename, delete, new directory
- log in extended window
- fixed crash on searching device
- more fixes/changes
Android Commander 0.7.1: http://www.mediafire.com/?oyroiwhkedu
Code:
Changes:
- from now program should works for much more roms *
- autodetecting BusyBox type
- files dates on lists
- fixed bug with flashing MainWindow on closing application info
- fixed bug with showing not apk files on apps list
- more small fixes/changes
* before program could not work for roms with "poor" BusyBox, where some commands and arguments just doesn't work. but now it's past, program detecting your BusyBox type and using correct commands :D however then you cant using sorting options(is disabled), i'll try to fix it in next versions
Android Commander 0.7: http://www.mediafire.com/?jedm03entcw
Code:
Changes:
- sorting options on applications list
- more details on applications list
- you can open info dialog for apk files placed on pc even if phone is not connected(works only if program is associated to apk files in system)
- standard application icon for apk files in phone/computer files panels
- some bug fixes
- some code clean up
Android Commander 0.7 beta3: http://www.mediafire.com/?zommxjdqzij
Code:
Changes:
- "missing dll" included in program exe
- uninstall/info app in context menu applications list
- double click on an apk file in any panel will open info dialog with install option
- fixed showing position of sub windows
- many small fixes
Android Commander 0.7 beta2: http://www.mediafire.com/?nzieeoywwnx
Missing dll file (sorry for that): http://www.mediafire.com/?y2nwzn3jkze
Code:
Changes:
- now in settings you can associate program with apk files in windows
- application info dialog
- icons in applications list
- auto remount when you deleting from/coping to system folder
- few new useful buttons
- context menu in computer files
- fixed selecting items in computer files
- more fixes
* before run, unpack "missing dll" to program folder (I'll include this in to exe in next release)
* icons are not loaded from apk files every time list is loading
* icons are stored on computer hard drive
* every time you open app info dialog or install an app using program, icon is loading to list
* to get all icons at once right click on apps list -> reload all icons (it's take some time, but you doing it only once ;))
*** Why beta?
Here is too many changes, too many bugs to find. I can't do it myself, I need your help.
Android Commander 0.6.66: http://www.mediafire.com/?mmcd5ztmnzk
Code:
Changes:
- from now program should works for everyone
- code fixes
Android Commander 0.6.5: http://www.mediafire.com/?lazzmtzgwym
Code:
Changes:
- drag & drop files/dirs/apps beetwen panels
- fixed window pos after start if u got 2 monitors (i hope, i have no way to test this)
- remember last window pos and size
- remember last dirs
- simple settings dialog
- symlinks are clickable now
- copy dialog
- more small changes
Android Commander 0.6: http://www.mediafire.com/?dyllv4dajty
Code:
Changes:
- big changes in program engine (now a bit slower, but more stable)
- no more problems with exploring "/data/data" phone directory
- computer files tab (for faster pulling/pushing)
- directories always first on the list
- simple settings from ini file
// how to use settings:
- open notepad and type:
[DefaultDirectories]
LeftPhonePanelDir=/ ; default "/"
RightPhonePanelDir=/sdcard/ ; default "/"
ComputerPanelDrive=D:\ ; default "C:/"
ComputerPanelDir=Android\ ; default ""
- save file as "settings.ini" in program directory
Android Commander 0.5.0.1: http://www.mediafire.com/?untnifm0gij
Code:
Changes:
- second files panel
- coping files/dirs between phone folders
- auto checking for apps2sd
- lots of UI changes
- small code fixes
- new name!!! because it's can match more than only apk managing
APK Manager v0.4.2: http://www.mediafire.com/?ykmnmntdukz
Code:
Changes:
- from now works fine with files/dirs with spaces in name
- now it's showing source path in log after drop files/dirs on program
- more small fixes
Bookmarks